This PR has been automatically tested with GH Actions. Here is the output of the MACAW test:

Starting dead-end test...
 - Found 1514 dead-end metabolites.
 - Found 1319 reactions incapable of sustaining steady-state fluxes in either direction due to these dead-ends.
 - Found 1977 reversible reactions that can only carry steady-state fluxes in a single direction due to dead-ends.
Starting duplicate test...
 - Skipping redox duplicates because no redox_pairs and/or proton_ids were provided.
 - Found 447 reactions that were some type of duplicate:
   - 0 were completely identical to at least one other reaction.
   - 13 involve the same metabolites but go in the opposite direction or have the opposite reversibility as at least one other reaction.
   - 447 involve the same metabolites but with different coefficients as at least one other reaction.

This and a more detailed output from MACAW are also committed to data/macawResults/.

Note: In the case of multiple test runs, this post will be edited.

This PR has been automatically tested with GH Actions. Here is the output of the gene essentiality test:

     cellLine     TP     TN     FP    FN     accuracy    sensitivity    specificity       F1         MCC   
    __________    __    ____    __    ___    ________    ___________    ___________    ________    ________

    {'DLD1'  }    37    2173    62    277    0.86701       0.11783        0.97226       0.17918     0.15325
    {'GBM'   }    34    2154    65    295    0.85871       0.10334        0.97071       0.15888      0.1285
    {'HCT116'}    46    2196    57    306    0.86065       0.13068         0.9747        0.2022     0.18487
    {'HELA'  }    31    2253    72    250    0.87644       0.11032        0.96903       0.16146     0.12632
    {'RPE1'  }    15    2192    84    257    0.86617      0.055147        0.96309      0.080863    0.029147
    {'all'   }     7    2394    96    109    0.92134      0.060345        0.96145      0.063927    0.023065

Note: In the case of multiple test runs, this post will be edited.